[INFO] fetching crate netcdf 0.6.1...
[INFO] building netcdf-0.6.1 against master#881c1ac408d93bb7adaa3a51dabab9266e82eee8 for issue-85264
[INFO] extracting crate netcdf 0.6.1 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate netcdf 0.6.1 on toolchain 881c1ac408d93bb7adaa3a51dabab9266e82eee8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf 0.6.1
[INFO] finished tweaking crates.io crate netcdf 0.6.1
[INFO] tweaked toml for crates.io crate netcdf 0.6.1 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate crates.io crate netcdf 0.6.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thread_local v1.1.2
[INFO] [stderr]   Downloaded libc v0.2.84
[INFO] [stderr]   Downloaded netcdf-sys v0.3.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b46232b91474ac54a756f00fe60509a6a24e050b1d4521ece99bbb0957509d5a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "b46232b91474ac54a756f00fe60509a6a24e050b1d4521ece99bbb0957509d5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b46232b91474ac54a756f00fe60509a6a24e050b1d4521ece99bbb0957509d5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b46232b91474ac54a756f00fe60509a6a24e050b1d4521ece99bbb0957509d5a", kill_on_drop: false }`
[INFO] [stdout] b46232b91474ac54a756f00fe60509a6a24e050b1d4521ece99bbb0957509d5a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 87a4be72c48a5a8872ef4a97c1b6a42eac6a22a9154e871a2d4a14459ce539f5
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "87a4be72c48a5a8872ef4a97c1b6a42eac6a22a9154e871a2d4a14459ce539f5", kill_on_drop: false }`
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling regex-syntax v0.6.22
[INFO] [stderr]    Compiling libc v0.2.84
[INFO] [stderr]    Compiling netcdf-sys v0.3.4
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling thread_local v1.1.2
[INFO] [stderr]    Compiling libloading v0.6.7
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9921d3ee6dd9033b/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55b31cb00970 - std::backtrace_rs::backtrace::libunwind::trace::hdcf4f90f85129e83
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55b31cb00970 - std::backtrace_rs::backtrace::trace_unsynchronized::h2669e30cb82f6732
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55b31cb00970 - std::sys_common::backtrace::_print_fmt::hfbda19e17f6db318
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55b31cb00970 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h1a8751bf59281272
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55b31cb1f4cf - core::fmt::write::h7aa6cd0067dca82a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/core/src/fmt/mod.rs:1094:17
[INFO] [stderr]      5:     0x55b31cafde05 - std::io::Write::write_fmt::hd7dd3a1df9b6befb
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/io/mod.rs:1584:15
[INFO] [stderr]      6:     0x55b31cb029eb - std::sys_common::backtrace::_print::h551e9ec8a9fa8106
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55b31cb029eb - std::sys_common::backtrace::print::ha4b1c5e95fa040b3
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55b31cb029eb - std::panicking::default_hook::{{closure}}::h0b34c9ab7fb9f857
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x55b31cb024cd - std::panicking::default_hook::h3067e8318decd17a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x55b31cb02f9d - std::panicking::rust_panic_with_hook::h81b8facc50f34daa
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:591:17
[INFO] [stderr]     11:     0x55b31c926053 - std::panicking::begin_panic::{{closure}}::h1e6cdb5ab29fb1c8
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:520:9
[INFO] [stderr]     12:     0x55b31c929cb9 - std::sys_common::backtrace::__rust_end_short_backtrace::hd8798532463ca724
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55b31c925f89 - std::panicking::begin_panic::h52ff1b6550e2570e
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:519:12
[INFO] [stderr]     14:     0x55b31c8f9da9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h777f13d4884c83e1
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x55b31c8fb5bc - build_script_build::main::h4486963048e63de0
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x55b31c9008cb - core::ops::function::FnOnce::call_once::hdfabcabc9c0a054f
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55b31c8fe39e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha3bd66d336b1d2a2
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55b31c905dc1 - std::rt::lang_start::{{closure}}::hd43ca9d235a398a2
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/rt.rs:49:18
[INFO] [stderr]     19:     0x55b31cb0339a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h3b8c329143d7638a
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55b31cb0339a - std::panicking::try::do_call::h4b72c261b4eefc1b
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:379:40
[INFO] [stderr]     21:     0x55b31cb0339a - std::panicking::try::h703d31b7896cbd49
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panicking.rs:343:19
[INFO] [stderr]     22:     0x55b31cb0339a - std::panic::catch_unwind::h37cad9b35388a915
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/panic.rs:431:14
[INFO] [stderr]     23:     0x55b31cb0339a - std::rt::lang_start_internal::hab5a8a909af4f90e
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/rt.rs:34:21
[INFO] [stderr]     24:     0x55b31c905da0 - std::rt::lang_start::hea55e07eb6f16ad5
[INFO] [stderr]                                  at /rustc/881c1ac408d93bb7adaa3a51dabab9266e82eee8/library/std/src/rt.rs:48:5
[INFO] [stderr]     25:     0x55b31c8fcabc - main
[INFO] [stderr]     26:     0x7fe3bf41b0b3 - __libc_start_main
[INFO] [stderr]     27:     0x55b31c8f4e4e - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "87a4be72c48a5a8872ef4a97c1b6a42eac6a22a9154e871a2d4a14459ce539f5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "87a4be72c48a5a8872ef4a97c1b6a42eac6a22a9154e871a2d4a14459ce539f5", kill_on_drop: false }`
[INFO] [stdout] 87a4be72c48a5a8872ef4a97c1b6a42eac6a22a9154e871a2d4a14459ce539f5
